Population genetics
Reviews & Methods
- Kamenova, S., Bartley, T., Bohan, D., Boutain, J. R., Colautti, R. I., Domaizon, I., Fontaine, C., Lemainque, A., LeViol, I., Mollot, G., Perga, M.-E., Ravigné, V. & François Massol. 2017. Invasions toolkit: current methods for tracking the spread and impact of invasive species. Advances in Ecological Research. Networks of Invasion: A Synthesis of Concepts. Bohan David A. (ed.), Dumbrell Alex J. (ed.), Massol François (ed.). Londres : Academic Press, p. 85-182.
- Cornuet, J.-M., Ravigné, V. & A. Estoup. 2010. Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC(v1.0). BMC Bioinformatics 11: 401 PDF
- Labonne, L., V. Ravigné, B. Parisi and C. Gaucherel. 2008. Linking dendritic network structures to population demogenetics: The downside of connectivity. Oikos 117:1479-1490
Classical population genetics
- Rieux, A., de Lapeyre de Bellaire, L., Zapater, M.-F., Ravigné, V., and J. Carlier. 2012. Recent range expansion and agricultural landscape heterogeneity have only minimal effect on the spatial genetic structure of the plant pathogenic fungus Mycosphaerella fijiensis. Heredity 110:29-38
- Saleh, D., Xu, P., Shen, Y., Li, C., Adreit, H., Milazzo, J., Ravigné, V., Bazin, E., Nottéghem, J.-L., Fournier, E. & D. Tharreau. 2012. Sex at the origin: an Asian population of the rice blast fungus Magnaporthe oryzae reproduces sexually. Molecular Ecology 21:1330-1344
- Rieux, A., Halkett, F., de Lapeyre de Bellaire, L., Zapater, M.-F., Rousset, F., Ravigné, V. & J. Carlier. 2011. Inferences on pathogenic fungus population structures from microsatellite data: an original landscape genetics approach reveals traces of historical events. Molecular Ecology 20: 1661-1674
- Perrier, C., Le Gentil, J., Ravigné, V., Gaudin, P. & J.-C. Salvado. 2014. Genetic origin and diversity among Atlantic salmon recolonizing upstream areas of a large South European river following connectivity restoration and stocking. Conservation Genetics 15:1095-1109
Inference of demo-genetic parameters
- Pirog, A., Jaquemet, S., Ravigné, V., Cliff, G., Clua, E., Holmes, B. J., Hussey, N. E., Nevill, J. E. G., Temple, A. J., Vigliola, L. & H. Magalon. 2019. Genetic population structure and demography of an apex predator, the tiger shark Galeocerdo cuvier. Accepted in Ecology & Evolution.
- Bermond, G., Blin, A., Vercken, E., Ravigné, V., Rieux, A., Mallez, S. Morel-Journel, T. & T. Guillemaud. Estimation of the dispersal of a major pest of maize by cline analysis of a temporary contact zone between two invasive outbreaks. Molecular Ecology 22: 5368-5381
- Rieux, A., Lenormand, T., Carlier, J., de Lapeyre de Bellaire, L. & V. Ravigné. 2013. Using neutral cline decay to estimate contemporary dispersal: a generic tool and its application to a major crop pathogen. Ecology Letters 16: 721-730
Deciphering the routes of invasions
- Pruvost, O., Boyer, K., Ravigné, V., Richard, D. & C. Vernière. 2019. Deciphering how plant pathogenic bacteria disperse and meet: molecular epidemiology of Xanthomonas citri pv. citri at microgeographic scales in a tropical area of Asiatic citrus canker endemicity. Early view in Evolutionary Applications.
- De Bruyn, A., Harimalala, M. A., Zinga, I., Mabvakure, B., Hoareau, M., Ravigné, V., Walters, M., Reynaud, B., Varsani, A., Harkins, G., W., Martin, D. P., Lett, J.-M., Lefeuvre, P. 2016. Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar. BMC Evolutionary Biology 16(182) PDF
- Leduc, A., Traoré, Y., Boyer, K., Magne, M., Grygiel, P., Juhasz, C. C., Guérin, F., Wonni, I., Vernière*, C., Ravigné*, V. & O. Pruvost*. 2015. Bridgehead invasion of a monomorphic plant pathogenic bacterium: Xanthomonas citri pv. citri, an emerging citrus pathogen in Mali and Burkina Faso. Environmental Microbiology 17:4429-4442 *Equal contributions
- Robert, S., Zapater, M.-F., Abadie, C., Carlier, J. & V. Ravigné. 2015. Multiple introductions and admixture at the origin of the continental spread of the fungal banana pathogen Mycosphaerella fijiensis in Latin America: a statistical test using Approximate Bayesian Computation. Revue d’Ecologie (Terre et Vie) 70 (suppt 12 «Espèces invasives »):127
- Pruvost, O., Magne, M., Boyer, K., Leduc, A., Tourterel, C., Drevet, C., Ravigné, V., Gagnevin, L., Guérin, F., Chiroleu, F., Koebnik, R., Verdier, V. & C. Vernière. 2014. A MLVA genotyping scheme for global surveillance of the citrus pathogen Xanthomonas citri pv. citri suggests a worldwide geographical expansion of a single genetic lineage. PLoS ONE 9:e98129 PDF
- Vernière, C., Bui Thi Ngoc, L., Jarne, P., Ravigné, V., Guérin, F., Gagnevin, L., Le Mai, N., Chau, N.M. & O. Pruvost. 2014. Highly polymorphic markers reveal the establishment of an invasive lineage of the citrus bacterial pathogen Xanthomonas citri pv. citri in its area of origin. Environmental Microbiology 16:2226-2237
- Barrès, B., Carlier, J., Seguin, M., Fenouillet, C., Cilas, C., & V. Ravigné. 2012. Understanding the recent colonization history of a plant pathogenic fungus using population genetic tools and Approximate Bayesian Computation. Heredity 109:269-279
- Dutech, C., Barrès, B., Bridier, J., Robin, C., Milgroom, M. & V. Ravigné. 2012. The Chestnut Blight Fungus World Tour: successive introduction events from diverse origins in an invasive plant fungal pathogen. Molecular Ecology 21:3931-3946
- Robert, S., Ravigné, V., Zapater, M.-F., Abadie, C. & J. Carlier. 2012. Contrasting introduction scenarios among continents in the worldwide invasion of the banana fungal pathogen Mycosphaerella fijiensis. Molecular Ecology 21(5): 1098-1114