Population genetics

Population genetics

Reviews & Methods

  1. Kamenova, S., Bartley, T., Bohan, D., Boutain, J. R., Colautti, R. I., Domaizon, I., Fontaine, C., Lemainque, A., LeViol, I., Mollot, G., Perga, M.-E., Ravigné, V. & François Massol. 2017. Invasions toolkit: current methods for tracking the spread and impact of invasive species. Advances in Ecological Research. Networks of Invasion: A Synthesis of Concepts. Bohan David A. (ed.), Dumbrell Alex J. (ed.), Massol François (ed.). Londres : Academic Press, p. 85-182.
  2. Cornuet, J.-M., Ravigné, V. & A. Estoup. 2010. Inference on population history and model checking using DNA sequence and microsatellite data with the software DIYABC(v1.0). BMC Bioinformatics 11: 401 PDF
  3. Labonne, L., V. Ravigné, B. Parisi and C. Gaucherel. 2008. Linking dendritic network structures to population demogenetics: The downside of connectivity. Oikos 117:1479-1490

Classical population genetics

  1. Rieux, A., de Lapeyre de Bellaire, L., Zapater, M.-F., Ravigné, V., and J. Carlier. 2012. Recent range expansion and agricultural landscape heterogeneity have only minimal effect on the spatial genetic structure of the plant pathogenic fungus Mycosphaerella fijiensis. Heredity 110:29-38
  2. Saleh, D., Xu, P., Shen, Y., Li, C., Adreit, H., Milazzo, J., Ravigné, V., Bazin, E., Nottéghem, J.-L., Fournier, E. & D. Tharreau. 2012. Sex at the origin: an Asian population of the rice blast fungus Magnaporthe oryzae reproduces sexually. Molecular Ecology 21:1330-1344
  3. Rieux, A., Halkett, F., de Lapeyre de Bellaire, L., Zapater, M.-F., Rousset, F., Ravigné, V. & J. Carlier. 2011. Inferences on pathogenic fungus population structures from microsatellite data: an original landscape genetics approach reveals traces of historical events. Molecular Ecology 20: 1661-1674
  4. Perrier, C., Le Gentil, J., Ravigné, V., Gaudin, P. & J.-C. Salvado. 2014. Genetic origin and diversity among Atlantic salmon recolonizing upstream areas of a large South European river following connectivity restoration and stocking. Conservation Genetics 15:1095-1109

Inference of demo-genetic parameters

  1. Pirog, A., Jaquemet, S., Ravigné, V., Cliff, G., Clua, E., Holmes, B. J., Hussey, N. E., Nevill, J. E. G., Temple, A. J., Vigliola, L. & H. Magalon. 2019. Genetic population structure and demography of an apex predator, the tiger shark Galeocerdo cuvier. Accepted in Ecology & Evolution.
  2. Bermond, G., Blin, A., Vercken, E., Ravigné, V., Rieux, A., Mallez, S. Morel-Journel, T. & T. Guillemaud. Estimation of the dispersal of a major pest of maize by cline analysis of a temporary contact zone between two invasive outbreaks. Molecular Ecology 22: 5368-5381
  3. Rieux, A., Lenormand, T., Carlier, J., de Lapeyre de Bellaire, L. & V. Ravigné. 2013. Using neutral cline decay to estimate contemporary dispersal: a generic tool and its application to a major crop pathogen. Ecology Letters 16: 721-730

Deciphering the routes of invasions

  1. Pruvost, O., Boyer, K., Ravigné, V., Richard, D. & C. Vernière. 2019. Deciphering how plant pathogenic bacteria disperse and meet: molecular epidemiology of Xanthomonas citri pv. citri at microgeographic scales in a tropical area of Asiatic citrus canker endemicity. Early view in Evolutionary Applications.
  2. De Bruyn, A., Harimalala, M. A., Zinga, I., Mabvakure, B., Hoareau, M., Ravigné, V., Walters, M., Reynaud, B., Varsani, A., Harkins, G., W., Martin, D. P., Lett, J.-M., Lefeuvre, P. 2016. Divergent evolutionary and epidemiological dynamics of cassava mosaic geminiviruses in Madagascar. BMC Evolutionary Biology 16(182) PDF
  3. Leduc, A., Traoré, Y., Boyer, K., Magne, M., Grygiel, P., Juhasz, C. C., Guérin, F., Wonni, I., Vernière*, C., Ravigné*, V. & O. Pruvost*. 2015. Bridgehead invasion of a monomorphic plant pathogenic bacterium: Xanthomonas citri pv. citri, an emerging citrus pathogen in Mali and Burkina Faso. Environmental Microbiology 17:4429-4442 *Equal contributions
  4. Robert, S., Zapater, M.-F., Abadie, C., Carlier, J. & V. Ravigné. 2015. Multiple introductions and admixture at the origin of the continental spread of the fungal banana pathogen Mycosphaerella fijiensis in Latin America: a statistical test using Approximate Bayesian Computation. Revue d’Ecologie (Terre et Vie) 70 (suppt 12 «Espèces invasives »):127
  5. Pruvost, O., Magne, M., Boyer, K., Leduc, A., Tourterel, C., Drevet, C., Ravigné, V., Gagnevin, L., Guérin, F., Chiroleu, F., Koebnik, R., Verdier, V. & C. Vernière. 2014. A MLVA genotyping scheme for global surveillance of the citrus pathogen Xanthomonas citri pv. citri suggests a worldwide geographical expansion of a single genetic lineage. PLoS ONE 9:e98129 PDF
  6. Vernière, C., Bui Thi Ngoc, L., Jarne, P., Ravigné, V., Guérin, F., Gagnevin, L., Le Mai, N., Chau, N.M. & O. Pruvost. 2014. Highly polymorphic markers reveal the establishment of an invasive lineage of the citrus bacterial pathogen Xanthomonas citri pv. citri in its area of origin. Environmental Microbiology 16:2226-2237
  7. Barrès, B., Carlier, J., Seguin, M., Fenouillet, C., Cilas, C., & V. Ravigné. 2012. Understanding the recent colonization history of a plant pathogenic fungus using population genetic tools and Approximate Bayesian Computation. Heredity 109:269-279
  8. Dutech, C., Barrès, B., Bridier, J., Robin, C., Milgroom, M. & V. Ravigné. 2012. The Chestnut Blight Fungus World Tour: successive introduction events from diverse origins in an invasive plant fungal pathogen. Molecular Ecology 21:3931-3946
  9. Robert, S., Ravigné, V., Zapater, M.-F., Abadie, C. & J. Carlier. 2012. Contrasting introduction scenarios among continents in the worldwide invasion of the banana fungal pathogen Mycosphaerella fijiensis. Molecular Ecology 21(5): 1098-1114

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